Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
L
|
M
|
N
|
P
|
R
|
S
|
T
|
U
|
V
|
X
|
Y
_
_abc_cache (binf.AbstractBinfNamedCallable attribute)
(binf.example.likelihood.ForwardModel attribute)
(binf.example.likelihood.GaussianErrorModel attribute)
(binf.example.priors.GammaPrior attribute)
(binf.example.priors.GaussianPrior attribute)
(binf.model.AbstractModel attribute)
(binf.model.errormodels.AbstractErrorModel attribute)
(binf.model.forwardmodels.AbstractForwardModel attribute)
(binf.pdf.AbstractBinfPDF attribute)
(binf.pdf.TestHO attribute)
(binf.pdf.example.Likelihood attribute)
(binf.pdf.example.NormalLikelihood attribute)
(binf.pdf.likelihoods.Likelihood attribute)
(binf.pdf.parameters.FancyGaussian attribute)
(binf.pdf.posteriors.Posterior attribute)
(binf.pdf.priors.AbstractPrior attribute)
(binf.samplers.gibbs.GibbsSampler attribute)
_abc_negative_cache (binf.AbstractBinfNamedCallable attribute)
(binf.example.likelihood.ForwardModel attribute)
(binf.example.likelihood.GaussianErrorModel attribute)
(binf.example.priors.GammaPrior attribute)
(binf.example.priors.GaussianPrior attribute)
(binf.model.AbstractModel attribute)
(binf.model.errormodels.AbstractErrorModel attribute)
(binf.model.forwardmodels.AbstractForwardModel attribute)
(binf.pdf.AbstractBinfPDF attribute)
(binf.pdf.TestHO attribute)
(binf.pdf.example.Likelihood attribute)
(binf.pdf.example.NormalLikelihood attribute)
(binf.pdf.likelihoods.Likelihood attribute)
(binf.pdf.parameters.FancyGaussian attribute)
(binf.pdf.posteriors.Posterior attribute)
(binf.pdf.priors.AbstractPrior attribute)
(binf.samplers.gibbs.GibbsSampler attribute)
_abc_negative_cache_version (binf.AbstractBinfNamedCallable attribute)
(binf.example.likelihood.ForwardModel attribute)
(binf.example.likelihood.GaussianErrorModel attribute)
(binf.example.priors.GammaPrior attribute)
(binf.example.priors.GaussianPrior attribute)
(binf.model.AbstractModel attribute)
(binf.model.errormodels.AbstractErrorModel attribute)
(binf.model.forwardmodels.AbstractForwardModel attribute)
(binf.pdf.AbstractBinfPDF attribute)
(binf.pdf.TestHO attribute)
(binf.pdf.example.Likelihood attribute)
(binf.pdf.example.NormalLikelihood attribute)
(binf.pdf.likelihoods.Likelihood attribute)
(binf.pdf.parameters.FancyGaussian attribute)
(binf.pdf.posteriors.Posterior attribute)
(binf.pdf.priors.AbstractPrior attribute)
(binf.samplers.gibbs.GibbsSampler attribute)
_abc_registry (binf.AbstractBinfNamedCallable attribute)
(binf.example.likelihood.ForwardModel attribute)
(binf.example.likelihood.GaussianErrorModel attribute)
(binf.example.priors.GammaPrior attribute)
(binf.example.priors.GaussianPrior attribute)
(binf.model.AbstractModel attribute)
(binf.model.errormodels.AbstractErrorModel attribute)
(binf.model.forwardmodels.AbstractForwardModel attribute)
(binf.pdf.AbstractBinfPDF attribute)
(binf.pdf.TestHO attribute)
(binf.pdf.example.Likelihood attribute)
(binf.pdf.example.NormalLikelihood attribute)
(binf.pdf.likelihoods.Likelihood attribute)
(binf.pdf.parameters.FancyGaussian attribute)
(binf.pdf.posteriors.Posterior attribute)
(binf.pdf.priors.AbstractPrior attribute)
(binf.samplers.gibbs.GibbsSampler attribute)
_accept_proposal() (binf.samplers.gibbs.GibbsSampler method)
_adapt_timestep() (binf.samplers.hmc.HMCSampler method)
_add_derived() (binf.ArrayParameter method)
(binf.pdf.example.Coefficients method)
(binf.pdf.example.LinearModel method)
(binf.pdf.parameters.Location method)
(binf.pdf.parameters.Precision method)
(binf.pdf.parameters.Scale method)
_asdict() (binf.example.samplers.RWMCSampleStats method)
(binf.samplers.hmc.HMCSampleStats method)
_calc_pacc() (binf.samplers.gibbs.GibbsSampler method)
_calculate_rate() (binf.example.samplers.GammaSampler method)
_calculate_shape() (binf.example.samplers.GammaSampler method)
_check_differentiability() (binf.AbstractBinfNamedCallable method)
(binf.example.likelihood.ForwardModel method)
(binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.AbstractModel method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.model.forwardmodels.AbstractForwardModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
_checkstate() (binf.samplers.gibbs.GibbsSampler method)
_complete_variables() (binf.AbstractBinfNamedCallable method)
(binf.example.likelihood.ForwardModel method)
(binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.AbstractModel method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.model.forwardmodels.AbstractForwardModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
_compute() (binf.ArrayParameter method)
(binf.pdf.example.Coefficients method)
(binf.pdf.example.LinearModel method)
(binf.pdf.parameters.Location method)
(binf.pdf.parameters.Precision method)
(binf.pdf.parameters.Scale method)
_copy_state() (binf.samplers.hmc.HMCSampler method)
_delete_variable() (binf.AbstractBinfNamedCallable method)
(binf.example.likelihood.ForwardModel method)
(binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.AbstractModel method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.model.forwardmodels.AbstractForwardModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
_ensure_consistency() (binf.ArrayParameter method)
(binf.pdf.example.Coefficients method)
(binf.pdf.example.LinearModel method)
(binf.pdf.parameters.Location method)
(binf.pdf.parameters.Precision method)
(binf.pdf.parameters.Scale method)
_evaluate() (binf.AbstractBinfNamedCallable method)
(binf.example.likelihood.ForwardModel method)
(binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.AbstractModel method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.model.forwardmodels.AbstractForwardModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
_evaluate_components() (binf.pdf.posteriors.Posterior method)
_evaluate_gradient() (binf.AbstractBinfNamedCallable method)
(binf.example.likelihood.ForwardModel method)
(binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.AbstractModel method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.model.forwardmodels.AbstractForwardModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
_evaluate_jacobi_matrix() (binf.example.likelihood.ForwardModel method)
(binf.model.forwardmodels.AbstractForwardModel method)
_evaluate_log_prob() (binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
_fields (binf.example.samplers.RWMCSampleStats attribute)
(binf.samplers.hmc.HMCSampleStats attribute)
_get_component_variables() (binf.pdf.posteriors.Posterior method)
_get_component_variables_list() (binf.pdf.posteriors.Posterior method)
_get_prior() (binf.example.samplers.GammaSampler method)
_get_variables_intersection() (binf.AbstractBinfNamedCallable method)
(binf.example.likelihood.ForwardModel method)
(binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.AbstractModel method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.model.forwardmodels.AbstractForwardModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
_inherit_em_variables() (binf.pdf.likelihoods.Likelihood method)
_inherit_fwm_variables() (binf.pdf.likelihoods.Likelihood method)
_inherit_variables() (binf.pdf.likelihoods.Likelihood method)
_invalidate() (binf.ArrayParameter method)
(binf.pdf.example.Coefficients method)
(binf.pdf.example.LinearModel method)
(binf.pdf.parameters.Location method)
(binf.pdf.parameters.Precision method)
(binf.pdf.parameters.Scale method)
_leapfrog() (binf.samplers.hmc.HMCSampler method)
_make() (binf.example.samplers.RWMCSampleStats class method)
(binf.samplers.hmc.HMCSampleStats class method)
_nearest_consistent_base() (binf.ArrayParameter method)
(binf.pdf.example.Coefficients method)
(binf.pdf.example.LinearModel method)
(binf.pdf.parameters.Location method)
(binf.pdf.parameters.Precision method)
(binf.pdf.parameters.Scale method)
_propose() (binf.samplers.gibbs.GibbsSampler method)
_recompute() (binf.ArrayParameter method)
(binf.pdf.example.Coefficients method)
(binf.pdf.example.LinearModel method)
(binf.pdf.parameters.Location method)
(binf.pdf.parameters.Precision method)
(binf.pdf.parameters.Scale method)
_recompute_derivatives() (binf.ArrayParameter method)
(binf.pdf.example.Coefficients method)
(binf.pdf.example.LinearModel method)
(binf.pdf.parameters.Location method)
(binf.pdf.parameters.Precision method)
(binf.pdf.parameters.Scale method)
_reduce_variables() (binf.example.likelihood.ForwardModel method)
(binf.model.AbstractModel method)
(binf.model.forwardmodels.AbstractForwardModel method)
_register() (binf.example.likelihood.ForwardModel method)
(binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.AbstractModel method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.model.forwardmodels.AbstractForwardModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.example.Likelihood method)
(binf.pdf.example.NormalLikelihood method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.parameters.FancyGaussian method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
_register_component_variables() (binf.pdf.posteriors.Posterior method)
_register_variable() (binf.AbstractBinfNamedCallable method)
(binf.example.likelihood.ForwardModel method)
(binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.AbstractModel method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.model.forwardmodels.AbstractForwardModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
_replace() (binf.example.samplers.RWMCSampleStats method)
(binf.samplers.hmc.HMCSampleStats method)
_set() (binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.example.Likelihood method)
(binf.pdf.example.NormalLikelihood method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.parameters.FancyGaussian method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
_set_base() (binf.ArrayParameter method)
(binf.pdf.example.Coefficients method)
(binf.pdf.example.LinearModel method)
(binf.pdf.parameters.Location method)
(binf.pdf.parameters.Precision method)
(binf.pdf.parameters.Scale method)
_set_original_variables() (binf.AbstractBinfNamedCallable method)
(binf.example.likelihood.ForwardModel method)
(binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.AbstractModel method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.model.forwardmodels.AbstractForwardModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
_set_parameters() (binf.example.likelihood.ForwardModel method)
(binf.model.forwardmodels.AbstractForwardModel method)
_setup_conditional_pdfs() (binf.samplers.gibbs.GibbsSampler method)
_setup_fixed_variable_parameters() (binf.pdf.likelihoods.Likelihood method)
_setup_parameters() (binf.pdf.likelihoods.Likelihood method)
(binf.pdf.posteriors.Posterior method)
_split_variables() (binf.pdf.likelihoods.Likelihood method)
_update() (binf.ArrayParameter method)
(binf.pdf.example.Coefficients method)
(binf.pdf.example.LinearModel method)
(binf.pdf.parameters.Location method)
(binf.pdf.parameters.Precision method)
(binf.pdf.parameters.Scale method)
_update_conditional_pdf_params() (binf.samplers.gibbs.GibbsSampler method)
_update_design_matrix() (binf.pdf.example.LinearModel method)
_update_state() (binf.samplers.gibbs.GibbsSampler method)
_update_statistics() (binf.samplers.gibbs.GibbsSampler method)
_update_subsampler_states() (binf.samplers.gibbs.GibbsSampler method)
_validate() (binf.ArrayParameter method)
(binf.example.likelihood.ForwardModel method)
(binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.AbstractModel method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.model.forwardmodels.AbstractForwardModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.example.Coefficients method)
(binf.pdf.example.Likelihood method)
(binf.pdf.example.LinearModel method)
(binf.pdf.example.NormalLikelihood method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.parameters.FancyGaussian method)
(binf.pdf.parameters.Location method)
(binf.pdf.parameters.Precision method)
(binf.pdf.parameters.Scale method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
A
AbstractBinfNamedCallable (class in binf)
AbstractBinfPDF (class in binf.pdf)
AbstractErrorModel (class in binf.model.errormodels)
AbstractForwardModel (class in binf.model.forwardmodels)
AbstractModel (class in binf.model)
AbstractPrior (class in binf.pdf.priors)
acceptance_rate (binf.example.samplers.RWMCSampler attribute)
(binf.example.samplers.RWMCSampleStats attribute)
(binf.samplers.gibbs.GibbsSampler attribute)
(binf.samplers.hmc.HMCSampler attribute)
accepted (binf.samplers.hmc.HMCSampleStats attribute)
args (binf.pdf.ParameterNotFoundError attribute)
(binf.pdf.parameters.InvalidOperationError attribute)
ArrayParameter (class in binf)
B
bind_to() (binf.ArrayParameter method)
(binf.pdf.example.Coefficients method)
(binf.pdf.example.LinearModel method)
(binf.pdf.parameters.Location method)
(binf.pdf.parameters.Precision method)
(binf.pdf.parameters.Scale method)
binf (module)
binf.example (module)
binf.example.likelihood (module)
binf.example.misc (module)
binf.example.plots (module)
binf.example.priors (module)
binf.example.samplers (module)
binf.model (module)
binf.model.errormodels (module)
binf.model.forwardmodels (module)
binf.pdf (module)
binf.pdf.example (module)
binf.pdf.likelihoods (module)
binf.pdf.parameters (module)
binf.pdf.posteriors (module)
binf.pdf.priors (module)
binf.samplers (module)
binf.samplers.gibbs (module)
binf.samplers.hmc (module)
BinfState (class in binf.samplers)
C
clone() (binf.example.likelihood.ForwardModel method)
(binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.model.forwardmodels.AbstractForwardModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
Coefficients (class in binf.pdf.example)
conditional_factory() (binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
count() (binf.example.samplers.RWMCSampleStats method)
(binf.samplers.hmc.HMCSampleStats method)
D
data (binf.example.likelihood.ForwardModel attribute)
(binf.model.forwardmodels.AbstractForwardModel attribute)
(binf.pdf.example.Likelihood attribute)
(binf.pdf.example.NormalLikelihood attribute)
differentiable_variables (binf.AbstractBinfNamedCallable attribute)
(binf.example.likelihood.ForwardModel attribute)
(binf.example.likelihood.GaussianErrorModel attribute)
(binf.example.priors.GammaPrior attribute)
(binf.example.priors.GaussianPrior attribute)
(binf.model.AbstractModel attribute)
(binf.model.errormodels.AbstractErrorModel attribute)
(binf.model.forwardmodels.AbstractForwardModel attribute)
(binf.pdf.AbstractBinfPDF attribute)
(binf.pdf.TestHO attribute)
(binf.pdf.likelihoods.Likelihood attribute)
(binf.pdf.posteriors.Posterior attribute)
(binf.pdf.priors.AbstractPrior attribute)
E
energy (binf.samplers.gibbs.GibbsSampler attribute)
error_model (binf.pdf.likelihoods.Likelihood attribute)
estimate() (binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.example.Likelihood method)
(binf.pdf.example.NormalLikelihood method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.parameters.FancyGaussian method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
estimator (binf.example.likelihood.GaussianErrorModel attribute)
(binf.example.priors.GammaPrior attribute)
(binf.example.priors.GaussianPrior attribute)
(binf.model.errormodels.AbstractErrorModel attribute)
(binf.pdf.AbstractBinfPDF attribute)
(binf.pdf.TestHO attribute)
(binf.pdf.example.Likelihood attribute)
(binf.pdf.example.NormalLikelihood attribute)
(binf.pdf.likelihoods.Likelihood attribute)
(binf.pdf.parameters.FancyGaussian attribute)
(binf.pdf.posteriors.Posterior attribute)
(binf.pdf.priors.AbstractPrior attribute)
evaluate() (binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.example.Likelihood method)
(binf.pdf.example.NormalLikelihood method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.parameters.FancyGaussian method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
F
FancyGaussian (class in binf.pdf.parameters)
find_base_parameter() (binf.ArrayParameter method)
(binf.pdf.example.Coefficients method)
(binf.pdf.example.LinearModel method)
(binf.pdf.parameters.Location method)
(binf.pdf.parameters.Precision method)
(binf.pdf.parameters.Scale method)
fix_variables() (binf.AbstractBinfNamedCallable method)
(binf.example.likelihood.ForwardModel method)
(binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.AbstractModel method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.model.forwardmodels.AbstractForwardModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
forward_model (binf.pdf.likelihoods.Likelihood attribute)
ForwardModel (class in binf.example.likelihood)
G
GammaPrior (class in binf.example.priors)
GammaSampler (class in binf.example.samplers)
GaussianErrorModel (class in binf.example.likelihood)
GaussianPrior (class in binf.example.priors)
get_MAP() (in module binf.example.misc)
get_params() (binf.example.likelihood.ForwardModel method)
(binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.AbstractModel method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.model.forwardmodels.AbstractForwardModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.example.Likelihood method)
(binf.pdf.example.NormalLikelihood method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.parameters.FancyGaussian method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
GibbsSampler (class in binf.samplers.gibbs)
gradient() (binf.AbstractBinfNamedCallable method)
(binf.example.likelihood.ForwardModel method)
(binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.AbstractModel method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.model.forwardmodels.AbstractForwardModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
H
HMCSampler (class in binf.samplers.hmc)
HMCSampleStats (class in binf.samplers.hmc)
I
index() (binf.example.samplers.RWMCSampleStats method)
(binf.samplers.hmc.HMCSampleStats method)
InvalidOperationError
is_virtual (binf.ArrayParameter attribute)
(binf.pdf.example.Coefficients attribute)
(binf.pdf.example.LinearModel attribute)
(binf.pdf.parameters.Location attribute)
(binf.pdf.parameters.Precision attribute)
(binf.pdf.parameters.Scale attribute)
J
jacobi_matrix() (binf.example.likelihood.ForwardModel method)
(binf.model.forwardmodels.AbstractForwardModel method)
L
last_draw_stats (binf.example.samplers.RWMCSampler attribute)
(binf.samplers.gibbs.GibbsSampler attribute)
(binf.samplers.hmc.HMCSampler attribute)
last_move_accepted (binf.samplers.gibbs.GibbsSampler attribute)
(binf.samplers.hmc.HMCSampler attribute)
Likelihood (class in binf.pdf.example)
(class in binf.pdf.likelihoods)
likelihoods (binf.pdf.posteriors.Posterior attribute)
LinearModel (class in binf.pdf.example)
Location (class in binf.pdf.parameters)
log_prob() (binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.example.Likelihood method)
(binf.pdf.example.NormalLikelihood method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.parameters.FancyGaussian method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
M
make_likelihood() (in module binf.example.likelihood)
make_posterior() (in module binf.example.misc)
make_priors() (in module binf.example.priors)
make_sampler() (in module binf.example.samplers)
message (binf.pdf.ParameterNotFoundError attribute)
(binf.pdf.parameters.InvalidOperationError attribute)
mock (binf.pdf.example.NormalLikelihood attribute)
momenta (binf.samplers.BinfState attribute)
mu (binf.pdf.example.NormalLikelihood attribute)
(binf.pdf.parameters.FancyGaussian attribute)
N
name (binf.AbstractBinfNamedCallable attribute)
(binf.ArrayParameter attribute)
(binf.example.likelihood.ForwardModel attribute)
(binf.example.likelihood.GaussianErrorModel attribute)
(binf.example.priors.GammaPrior attribute)
(binf.example.priors.GaussianPrior attribute)
(binf.model.AbstractModel attribute)
(binf.model.errormodels.AbstractErrorModel attribute)
(binf.model.forwardmodels.AbstractForwardModel attribute)
(binf.pdf.AbstractBinfPDF attribute)
(binf.pdf.TestHO attribute)
(binf.pdf.example.Coefficients attribute)
(binf.pdf.example.LinearModel attribute)
(binf.pdf.likelihoods.Likelihood attribute)
(binf.pdf.parameters.Location attribute)
(binf.pdf.parameters.Precision attribute)
(binf.pdf.parameters.Scale attribute)
(binf.pdf.posteriors.Posterior attribute)
(binf.pdf.priors.AbstractPrior attribute)
NormalLikelihood (class in binf.pdf.example)
NULL (binf.ArrayParameter attribute)
(binf.pdf.example.Coefficients attribute)
(binf.pdf.example.LinearModel attribute)
(binf.pdf.parameters.Location attribute)
(binf.pdf.parameters.Precision attribute)
(binf.pdf.parameters.Scale attribute)
P
ParameterNotFoundError
parameters (binf.example.likelihood.ForwardModel attribute)
(binf.example.likelihood.GaussianErrorModel attribute)
(binf.example.priors.GammaPrior attribute)
(binf.example.priors.GaussianPrior attribute)
(binf.model.AbstractModel attribute)
(binf.model.errormodels.AbstractErrorModel attribute)
(binf.model.forwardmodels.AbstractForwardModel attribute)
(binf.pdf.AbstractBinfPDF attribute)
(binf.pdf.TestHO attribute)
(binf.pdf.example.Likelihood attribute)
(binf.pdf.example.NormalLikelihood attribute)
(binf.pdf.likelihoods.Likelihood attribute)
(binf.pdf.parameters.FancyGaussian attribute)
(binf.pdf.posteriors.Posterior attribute)
(binf.pdf.priors.AbstractPrior attribute)
pdf (binf.samplers.gibbs.GibbsSampler attribute)
plot_fit() (in module binf.example.plots)
plot_hists() (in module binf.example.plots)
plot_prediction_tube() (in module binf.example.plots)
Posterior (class in binf.pdf.posteriors)
precision (binf.pdf.example.NormalLikelihood attribute)
(binf.pdf.parameters.FancyGaussian attribute)
Precision (class in binf.pdf.parameters)
predict() (in module binf.example.misc)
priors (binf.pdf.posteriors.Posterior attribute)
R
random() (binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.example.Likelihood method)
(binf.pdf.example.NormalLikelihood method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.parameters.FancyGaussian method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
RWMCSampler (class in binf.example.samplers)
RWMCSampleStats (class in binf.example.samplers)
S
sample() (binf.example.samplers.GammaSampler method)
(binf.example.samplers.RWMCSampler method)
(binf.samplers.gibbs.GibbsSampler method)
(binf.samplers.hmc.HMCSampler method)
sampling_stats (binf.samplers.gibbs.GibbsSampler attribute)
Scale (class in binf.pdf.parameters)
set() (binf.ArrayParameter method)
(binf.pdf.example.Coefficients method)
(binf.pdf.example.LinearModel method)
(binf.pdf.parameters.Location method)
(binf.pdf.parameters.Precision method)
(binf.pdf.parameters.Scale method)
set_fixed_variables_from_pdf() (binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
set_params() (binf.example.likelihood.ForwardModel method)
(binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.AbstractModel method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.model.forwardmodels.AbstractForwardModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.example.Likelihood method)
(binf.pdf.example.NormalLikelihood method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.parameters.FancyGaussian method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
sigma (binf.pdf.example.NormalLikelihood attribute)
(binf.pdf.parameters.FancyGaussian attribute)
state (binf.samplers.gibbs.GibbsSampler attribute)
stepsize (binf.samplers.hmc.HMCSampleStats attribute)
subsamplers (binf.samplers.gibbs.GibbsSampler attribute)
T
temperature (binf.samplers.gibbs.GibbsSampler attribute)
TestHO (class in binf.pdf)
U
update_momenta() (binf.samplers.BinfState method)
update_samplers() (binf.samplers.gibbs.GibbsSampler method)
update_var_param_types() (binf.AbstractBinfNamedCallable method)
(binf.example.likelihood.ForwardModel method)
(binf.example.likelihood.GaussianErrorModel method)
(binf.example.priors.GammaPrior method)
(binf.example.priors.GaussianPrior method)
(binf.model.AbstractModel method)
(binf.model.errormodels.AbstractErrorModel method)
(binf.model.forwardmodels.AbstractForwardModel method)
(binf.pdf.AbstractBinfPDF method)
(binf.pdf.TestHO method)
(binf.pdf.likelihoods.Likelihood method)
(binf.pdf.posteriors.Posterior method)
(binf.pdf.priors.AbstractPrior method)
update_variables() (binf.samplers.BinfState method)
V
value (binf.ArrayParameter attribute)
(binf.pdf.example.Coefficients attribute)
(binf.pdf.example.LinearModel attribute)
(binf.pdf.parameters.Location attribute)
(binf.pdf.parameters.Precision attribute)
(binf.pdf.parameters.Scale attribute)
var_param_types (binf.AbstractBinfNamedCallable attribute)
(binf.example.likelihood.ForwardModel attribute)
(binf.example.likelihood.GaussianErrorModel attribute)
(binf.example.priors.GammaPrior attribute)
(binf.example.priors.GaussianPrior attribute)
(binf.model.AbstractModel attribute)
(binf.model.errormodels.AbstractErrorModel attribute)
(binf.model.forwardmodels.AbstractForwardModel attribute)
(binf.pdf.AbstractBinfPDF attribute)
(binf.pdf.TestHO attribute)
(binf.pdf.likelihoods.Likelihood attribute)
(binf.pdf.posteriors.Posterior attribute)
(binf.pdf.priors.AbstractPrior attribute)
variable_name (binf.samplers.hmc.HMCSampler attribute)
variables (binf.AbstractBinfNamedCallable attribute)
(binf.example.likelihood.ForwardModel attribute)
(binf.example.likelihood.GaussianErrorModel attribute)
(binf.example.priors.GammaPrior attribute)
(binf.example.priors.GaussianPrior attribute)
(binf.model.AbstractModel attribute)
(binf.model.errormodels.AbstractErrorModel attribute)
(binf.model.forwardmodels.AbstractForwardModel attribute)
(binf.pdf.AbstractBinfPDF attribute)
(binf.pdf.TestHO attribute)
(binf.pdf.likelihoods.Likelihood attribute)
(binf.pdf.posteriors.Posterior attribute)
(binf.pdf.priors.AbstractPrior attribute)
(binf.samplers.BinfState attribute)
X
x (binf.pdf.example.LinearModel attribute)
Y
y (binf.pdf.example.LinearModel attribute)
binf
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